species:   Bodot
pid:       PID1102
parent:    Bd-milR51
paralog:   
locus:     MU009151.1:1869994-1870222
matures:   ['UGGAUUUGAGGACAUGGCUGGA', 'CAGCGACUUCAGGCCAGA']
srr:       SRR8374848
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram MU009151.1:1869994-1870222

2 out of bounds
5 alignments
1 proper strand
1 stranded perfect matches

                                                                                                                                                   ********************                            ************************          
CUCUCGGACGGCUUGGUGUCGUCCUUCUUCUCCGCCGCAGCGGGGGGGUGGGCAUGCGCCGUGUCUUGGACCUGCUUGAUUCCCGCGAGCAUGUUGACACGACCGUUGAUCGCGUCAACCUGCGAUGAGAGCUGGGCGUUGUCCUGCUGCAGCGACUUCAGGCCAGACAGAAUCUCGCCCAACAGGGCAGAGACGUCUGGAUUUGAGGACAUGGCUGGAGAUUGCGAGA
.(((((((((((.....)))))))..(((((((((....))))))))).(((((.((((((((((...(((.((((((.......)))))).))))))))...(.((.((((((......)))))).)).)...))))))))))..((.((((.((((((((((((((....((((((((....)))).)))).)))))).)))))))...).)))).)).....))))
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGGAUUUGAGGACAUGGCUGGA---------- l=22 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------------------CAGCGACUUCAGGCCAGA-------------------------------------------------------------- l=18 a=0 c*
-----------------------------------------------------AUGCGCCGUGUCUUGGACCUG----------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------CAGCGACUUCAGGCCAGA-------------------------------------------------------------- l=18 a=0 ma*

-----------------------------------------------------AUGCGCCGUGUCUUGGACCUG----------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 (ma)

mb-00011
ax-1011011
ku-01
ss-110110011000
fn-101
